PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g017970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 318aa    MW: 33455.7 Da    PI: 8.7401
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g017970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702212.97.4e-661032702154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel....kskkqsalsstkl 91 
                     +sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + a+ +a +s  +++ +k++r      ++++q+a+s+t++
  Csa20g017970.1 103 ASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPSGANPTAGSSLsTSSGTKKPRIVgsqqQQQQQQATSHTST 197
                     57999************************************************999999888887757778888887666534555555566665 PP

          DUF702  92 ssaeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     s++ +++++etss           +P +++++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle 
  Csa20g017970.1 198 SNT-PPRSFETSSsrqdgggsreaWPGQIRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 270
                     554.66788888789********************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.6E-59106269IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.8E-26108150IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-30220268IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGMVGLRDVF LVAPAYHHHQ NAGVISGPEA AALGVGVVPL LTAGPPQQQN VEDTDINFLG  60
NNRRWQNNNN NNHETQYLHF KSTSNQTAVG TSSNNNSGSG SGASGTATCQ DCGNQAKKEC  120
KQRRCRTCCK SRGFDCSTHV KSTWVSAARR RERQVMPSGA NPTAGSSLST SSGTKKPRIV  180
GSQQQQQQQQ ATSHTSTSNT PPRSFETSSS RQDGGGSREA WPGQIRAPAV FKCVRVTAVE  240
DGDDEYAYQA VVKIGGHVFK GFLYDQGLEP KEGFPNMSDL HLGGAANNHN GVSASAPILD  300
PPNVYGGGGG SGGGFYG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0206140.0BT020614.1 Arabidopsis thaliana At5g12330 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491992.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_010491993.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK91e-164LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLR0HF130.0R0HF13_9BRAS; Uncharacterized protein
STRINGBra008898.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-160Lateral root primordium (LRP) protein-related